Last updated: 2022-08-30

Checks: 2 0

Knit directory: TOP-paper-resources/

This reproducible R Markdown analysis was created with workflowr (version 1.7.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 4a43341

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The results in this page were generated with repository version 4a43341. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

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Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    code/.DS_Store
    Ignored:    code/snakemake/.DS_Store
    Ignored:    code/snakemake/workflow/.DS_Store
    Ignored:    code/snakemake/workflow/scripts/.DS_Store
    Ignored:    data/.DS_Store
    Ignored:    data/trained_model_coef/.DS_Store
    Ignored:    data/trained_model_coef/ATAC/.DS_Store
    Ignored:    data/trained_model_coef/DukeDnase/.DS_Store
    Ignored:    data/trained_model_coef/UwDnase/.DS_Store

Untracked files:
    Untracked:  README.html

Unstaged changes:
    Modified:   README.md

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd 4a43341 kevinlkx 2022-08-30 updated reference and link to TOP predictions
html 78af7e3 kevinlkx 2022-04-27 Build site.
Rmd 2346f3b kevinlkx 2022-04-27 removed the github link in license statement
html f1cba04 kevinlkx 2022-04-27 Build site.
Rmd 8b37c07 kevinlkx 2022-04-27 added a link to github repo
html 39934f0 kevinlkx 2022-04-27 Build site.
Rmd a3e6b75 kevinlkx 2022-04-27 link predictions to lab website
html bcd96ef kevinlkx 2022-04-27 Build site.
Rmd c89749b kevinlkx 2022-04-27 fixed the link the pretrained model
html cd1a5d1 kevinlkx 2022-04-27 Build site.
html aa06868 kevinlkx 2022-04-27 Build site.
Rmd c470a19 kevinlkx 2022-04-27 minor edits
html f74170c kevinlkx 2022-04-27 Build site.
Rmd 502be6c kevinlkx 2022-04-27 added links to TOP predictions
html 37856a4 kevinlkx 2022-04-27 Build site.
Rmd 0fddad4 kevinlkx 2022-04-27 added links to the pipeline and model parameters
html c70eb96 kevinlkx 2022-04-27 Build site.
Rmd bdc0ae3 kevinlkx 2022-04-27 updated the text format
html 217deac kevinlkx 2022-04-27 Build site.
Rmd bea842e kevinlkx 2022-04-27 simply the website
html 23dcb89 kevinlkx 2022-04-27 Build site.
html 15d5266 kevinlkx 2022-04-27 Build site.
Rmd fbd6047 kevinlkx 2022-04-27 Publish the initial files
Rmd 3e94c57 kevinlkx 2022-04-27 Start workflowr project.

This is a companion website to the TOP package and contains the data resources and data processing pipelines for the TOP paper.

Reference

License

All source code and software in this repository are made available under the terms of the MIT license.