Plots DNase or ATAC profiles by strands of motif matches

Source: R/plots.R

Plots DNase or ATAC profiles by strands of motif matches

plot_profile_strands(
  cuts,
  sites,
  mlen = ncol(cuts)/2 - 200,
  title = "",
  strand = c("both", "+", "-")
)

Arguments

cuts

Matrix of DNase or ATAC cuts

sites

Data frame of candidate sites

mlen

Motif length

title

Title of the plot

Examples

if (FALSE) {
plot_profile_strands(cuts, sites, title='Footprint profiles around binding sites')
}